Run on a cluster
Last updated
Last updated
cluster configuration: config/cluster.yaml
Here is an example configuration:
cluster command: config/cluster_command.txt
Commonly used parameters
Refer to the snakemake documentation.
Parameter
Description
__default__
Rule name (__default__
) for default configuration)
queue
Queue name (required)
name
Job name
stderr
Log file for standard error
stdout
Log file for standard output
threads
Number of parallel threads for a job
resources
Resource requirements. span[hosts=1]
prevents parallel jobs from being submitted to different nodes